Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18056693_18057452_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18056693 - 18057452

Intron Length:

760

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTGTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCTAAA

U12 Branch Point Sequence:

TGTGCCTAAAAC

Flanking Amino Acid:

GLKSEFRQNLGRMFIFYGNK

Intron Amino Acid Position:

736

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

78.8

38.3

Major BPS

0.12

1.2

57.8

37.4

Major PPT

0.76

0.8

76.9

37.3

Minor 5ss

49.3

-0

2.8

65.3

45.9

Minor BPS

55.7

0.16

1.9

68.33

42.9

Associated Gene:

Gene:

AP2A2

Ensembl Gene ID:

ENSAPLG00000016325

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037042

18052720 - 18101201

48482

ENSAPLT00000030543

18052720 - 18101201

48482

ENSAPLT00000017061

18052720 - 18101201

48482