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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18057536_18060229_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18057536 - 18060229
Intron Length:
2694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTTAATTTAAAA
Flanking Amino Acid:
LAPGSDDNFARFVCKNNGVL
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
81
0.7
0.7
73.9
31.3
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
55.1
0.16
1.7
66.32
39.8

Associated Gene:

Gene:
AP2A2
Ensembl Gene ID:
ENSAPLG00000016325
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017061
18052720 - 18101201
48482