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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18063994_18064717_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18063994 - 18064717
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTGTTCTTACAG
Flanking Amino Acid:
QGYAAKTVFEALQAPACHEN
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83
0.74
0.9
76.5
37.7
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
50.5
-0.1
1.8
56.74
44.6

Associated Gene:

Gene:
AP2A2
Ensembl Gene ID:
ENSAPLG00000016325
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017061
18052720 - 18101201
48482
ENSAPLT00000037042
18052720 - 18101201
48482
ENSAPLT00000030543
18052720 - 18101201
48482