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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18066163_18067036_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18066163 - 18067036
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GATCTTTTGACC
Flanking Amino Acid:
HIETVINALKTERDVSVRQR
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
88.8
0.87
0.7
84.2
30.7
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
60
0.3
1.2
64.27
34.9

Associated Gene:

Gene:
AP2A2
Ensembl Gene ID:
ENSAPLG00000016325
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017061
18052720 - 18101201
48482
ENSAPLT00000037042
18052720 - 18101201
48482
ENSAPLT00000030543
18052720 - 18101201
48482