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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18067206_18067618_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18067206 - 18067618
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGCTTTTAACC
Flanking Amino Acid:
EAISLIIHHDSEPNLLVRAC
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.4
0.62
1
72.8
37.5
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
71.4
0.65
1.2
75.03
35.6

Associated Gene:

Gene:
AP2A2
Ensembl Gene ID:
ENSAPLG00000016325
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037042
18052720 - 18101201
48482
ENSAPLT00000030543
18052720 - 18101201
48482
ENSAPLT00000017061
18052720 - 18101201
48482