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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18068385_18069832_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18068385 - 18069832
Intron Length:
1448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTCCA
5'SS Class:
major
3'SS Sequence:
GCTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GTCTGCTTATTT
Flanking Amino Acid:
VSLAVSRLSRIVTSASTDLQ
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1
61.4
39.2
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
82.4
0.73
0.9
75.8
37.8
Minor 5ss
30.3
-2.3
2.8
30.2
36.1
Minor BPS
53
0.17
2
72.14
45.2

Associated Gene:

Gene:
AP2A2
Ensembl Gene ID:
ENSAPLG00000016325
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037042
18052720 - 18101201
48482
ENSAPLT00000030543
18052720 - 18101201
48482
ENSAPLT00000017061
18052720 - 18101201
48482