Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18071035_18072798_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18071035 - 18072798

Intron Length:

1764

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAGGTATG

5'SS Class:

major

3'SS Sequence:

TTATGTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTGGGTTTAAGA

Flanking Amino Acid:

AGEIPKILVAGDTMDSVKQS

Intron Amino Acid Position:

158

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

1.1

72.7

44.5

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

83.1

0.75

0.9

77.4

36.6

Minor 5ss

37.5

-1.4

3.1

42.2

44.7

Minor BPS

48.1

-0.1

2.1

62.04

Associated Gene:

Gene:

AP2A2

Ensembl Gene ID:

ENSAPLG00000016325

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017061

18052720 - 18101201

48482

ENSAPLT00000037042

18052720 - 18101201

48482

ENSAPLT00000030543

18052720 - 18101201

48482