About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18109177_18109855_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18109177 - 18109855
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTCTAAAAACT
Flanking Amino Acid:
KGATKKMEEKVLHSDKTVQE
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.4
0.64
0.8
76.5
32.1
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
44.8
-0.3
2.1
68.32
41.9

Associated Gene:

Gene:
CHID1
Ensembl Gene ID:
ENSAPLG00000003133
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003208
18109010 - 18203944
94935