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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18110961_18111971_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18110961 - 18111971
Intron Length:
1011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTTCTTT
5'SS Class:
weak_major
3'SS Sequence:
TACCGTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTCTCTTACTT
Flanking Amino Acid:
QFTGLHDADKGWMKDVRKNS
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
65.4
40.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.7
0.42
1
64
41.4
Minor 5ss
58.1
0.27
2.3
74.5
41.6
Minor BPS
62
0.45
1.6
77.64
39

Associated Gene:

Gene:
CHID1
Ensembl Gene ID:
ENSAPLG00000003133
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003208
18109010 - 18203944
94935