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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18112017_18113290_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18112017 - 18113290
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTTTCTTGATA
Flanking Amino Acid:
VRKNSKNIKIVPRILFDGWT
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.4
0.64
0.9
76.3
32.4
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
73.6
0.74
1.1
77.25
33.8

Associated Gene:

Gene:
CHID1
Ensembl Gene ID:
ENSAPLG00000003133
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003208
18109010 - 18203944
94935