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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1814502_1820593_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1814502 - 1820593
Intron Length:
6092

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGTCACTGATTT
Flanking Amino Acid:
SGKVSKSQLKVLSHNLCTVL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.8
69
41.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
70.2
0.45
0.9
62
39.9
Minor 5ss
19.8
-3.5
3.8
29.5
43.3
Minor BPS
47.7
-0.1
1.9
68.65
41.7

Associated Gene:

Gene:
SWAP70
Ensembl Gene ID:
ENSAPLG00000003053
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003150
1786214 - 1820797
34584