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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18148098_18150065_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18148098 - 18150065
Intron Length:
1968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
GCTAACTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
TTTTGGCTAACT
Flanking Amino Acid:
LMTYDYSTPQRPGPNSPLPW
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
70.2
40.5
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
62.1
0.27
1
54.8
39.9
Minor 5ss
37
-1.5
3.3
52.7
44
Minor BPS
49.7
0.06
2.7
84.58
42.1

Associated Gene:

Gene:
CHID1
Ensembl Gene ID:
ENSAPLG00000003133
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003208
18109010 - 18203944
94935