Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18198840_18201779_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18198840 - 18201779

Intron Length:

2940

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

TCCTGTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TTGTGATTACTG

Flanking Amino Acid:

QIAEHYFKYKKNKGGKHAIF

Intron Amino Acid Position:

347

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

77.3

26.4

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

84.8

0.78

0.8

79.6

32.4

Minor 5ss

36.8

-1.5

2.9

43.7

38.1

Minor BPS

45.2

-0.5

2.2

55.85

45.9

Associated Gene:

Gene:

CHID1

Ensembl Gene ID:

ENSAPLG00000003133

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003208

18109010 - 18203944

94935