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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18201823_18203845_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18201823 - 18203845
Intron Length:
2023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTGTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
ATTGCTTTATGT
Flanking Amino Acid:
KHAIFYPTLKSIQLRLELAK
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
74
0.54
0.9
72.7
37.5
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
51.9
0.14
2
73.56
43.9

Associated Gene:

Gene:
CHID1
Ensembl Gene ID:
ENSAPLG00000003133
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003208
18109010 - 18203944
94935