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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18225944_18228758_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18225944 - 18228758
Intron Length:
2815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ACTTACTGAAAA
Flanking Amino Acid:
IFGLCTALVQILGLTFAMTM
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
85
0.79
0.6
84.9
22.8
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
53.6
0.11
1.8
65.44
40.2

Associated Gene:

Gene:
TSPAN4
Ensembl Gene ID:
ENSAPLG00000003602
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039716
18225875 - 18454256
228382
ENSAPLT00000037712
18225875 - 18409115
183241
ENSAPLT00000031480
18225875 - 18557755
331881
ENSAPLT00000003710
18225875 - 18446427
220553