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Intron Name: Anas_platyrhynchos_platyrhynchos_5_18228843_18230406_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18228843 - 18230406

Intron Length:

1564

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTAAT

U12 Branch Point Sequence:

TTAGAGCTAATA

Flanking Amino Acid:

LHSPGTWWKAPCYETVKIWL

Intron Amino Acid Position:

217

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

74.4

37.7

Major BPS

70.5

0.51

1.1

69.7

35.5

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

30.9

-2.2

44.5

Minor BPS

41.8

-0.6

2.4

57.73

41.8

Associated Gene:

Gene:

TSPAN4

Ensembl Gene ID:

ENSAPLG00000003602

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039716

18225875 - 18454256

228382

ENSAPLT00000037712

18225875 - 18409115

183241

ENSAPLT00000031480

18225875 - 18557755

331881

ENSAPLT00000003710

18225875 - 18446427

220553