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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18230539_18239137_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18230539 - 18239137
Intron Length:
8599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCATCCTTACAG
Flanking Amino Acid:
TNAWSIIQTDFRCCGVSNYT
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.7
41.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88
0.85
0.8
80.4
37
Minor 5ss
40.3
-1.1
3.1
54.9
42.3
Minor BPS
56.8
0.08
1.8
61.4
46

Associated Gene:

Gene:
TSPAN4
Ensembl Gene ID:
ENSAPLG00000003602
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037712
18225875 - 18409115
183241
ENSAPLT00000031480
18225875 - 18557755
331881
ENSAPLT00000003710
18225875 - 18446427
220553
ENSAPLT00000039716
18225875 - 18454256
228382