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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18272689_18288923_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18272689 - 18288923
Intron Length:
16235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
CTTCTCTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
CTTCTCTTGACA
Flanking Amino Acid:
IKENKCLLLSFFIMLLIIFL
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
79
0.65
0.9
75.6
32.9
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
70.6
0.64
1.2
75.39
35.8

Associated Gene:

Gene:
TSPAN4
Ensembl Gene ID:
ENSAPLG00000003602
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039716
18225875 - 18454256
228382
ENSAPLT00000037712
18225875 - 18409115
183241
ENSAPLT00000031480
18225875 - 18557755
331881
ENSAPLT00000003710
18225875 - 18446427
220553