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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18289116_18408043_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18289116 - 18408043
Intron Length:
118928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATTT
Flanking Amino Acid:
LMFVFNLLFWLGGCGILGVG
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.4
40.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
30.2
-2.3
2.5
26.6
35.9
Minor BPS
69.5
0.69
1.5
83.25
38.8

Associated Gene:

Gene:
TSPAN4
Ensembl Gene ID:
ENSAPLG00000003602
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037712
18225875 - 18409115
183241
ENSAPLT00000031480
18225875 - 18557755
331881
ENSAPLT00000003710
18225875 - 18446427
220553