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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18289116_18454106_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18289116 - 18454106
Intron Length:
164991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATTT
Flanking Amino Acid:
ARHKQAAEAELGGCGILGVG
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
69.5
0.69
1.5
83.25
38.8

Associated Gene:

Gene:
TSPAN4
Ensembl Gene ID:
ENSAPLG00000003602
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039716
18225875 - 18454256
228382