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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18454157_18557662_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18454157 - 18557662
Intron Length:
103506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TCTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTTCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
72.4
33.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.9
0.87
0.7
83.5
31.2
Minor 5ss
41.5
-0.9
3
58.2
40.5
Minor BPS
69.5
0.69
1.5
82.89
39.2

Associated Gene:

Gene:
TSPAN4
Ensembl Gene ID:
ENSAPLG00000003602
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031480
18225875 - 18557755
331881