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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1863312_1866997_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1863312 - 1866997
Intron Length:
3686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATTG
5'SS Class:
major
3'SS Sequence:
ATCCTGGATAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATTGTCAATT
Flanking Amino Acid:
DLQKHIRTHTVLFTPSVFHT
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
67
39
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
53.2
0.07
1.2
52
40.6
Minor 5ss
47.7
-0.2
2.8
64.9
46.4
Minor BPS
51.7
0.13
2.2
76.49
40.5

Associated Gene:

Gene:
ZNF143
Ensembl Gene ID:
ENSAPLG00000002385
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002442
1855696 - 1879635
23940