Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18675639_18676468_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18675639 - 18676468

Intron Length:

830

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

CTGCTTGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTGAT

U12 Branch Point Sequence:

GTGCTCTCGATC

Flanking Amino Acid:

NIMEPMLHMARLLTAQEDRQ

Intron Amino Acid Position:

734

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

1.2

81.4

32.7

Major BPS

73.6

0.59

1.2

65.3

43.7

Major PPT

77.9

0.63

0.9

72.2

37.8

Minor 5ss

31.4

-2.1

2.5

36.7

40.4

Minor BPS

48.1

-0.1

1.5

55.47

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013528

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014099

18675554 - 18698720

23167