Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18676546_18676874_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18676546 - 18676874

Intron Length:

329

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGCCTC

5'SS Class:

major

3'SS Sequence:

TGCTCCCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAG

U12 Branch Point Sequence:

TGCTCCCTGGCA

Flanking Amino Acid:

PRVEGERLAKEYKAVFYECS

Intron Amino Acid Position:

709

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

64.9

41.2

Major BPS

43.9

-0.3

1.6

36.8

44.4

Major PPT

69.9

0.45

65.5

36.1

Minor 5ss

43.1

-0.8

58.6

46.2

Minor BPS

41.1

-0.7

3.6

63.99

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013528

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014099

18675554 - 18698720

23167