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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18676983_18678274_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18676983 - 18678274
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAG
U12 Branch Point Sequence:
GTTTCTTTTGCA
Flanking Amino Acid:
AVRNWMSSVQEGIEDGAVVF
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.6
36.5
Major BPS
44.4
-0.3
1.6
54.3
42.9
Major PPT
89.4
0.89
0.7
84.5
30.4
Minor 5ss
25.3
-2.8
3.1
30.1
43.1
Minor BPS
44.6
-0.4
3.6
71.79
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013528
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014099
18675554 - 18698720
23167