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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18681132_18682213_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18681132 - 18682213
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATATT
5'SS Class:
strong_major
3'SS Sequence:
GGCTTTAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGGGCTTTAATG
Flanking Amino Acid:
IKQQKPRLGSRQLASAELPV
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.8
89.3
23.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
69
0.43
1
62.8
42.2
Minor 5ss
35.6
-1.6
3
50.6
45.9
Minor BPS
60.5
0.19
1.5
59.33
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013528
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014099
18675554 - 18698720
23167