Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18682376_18683012_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18682376 - 18683012

Intron Length:

637

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTTAGATGG

5'SS Class:

major

3'SS Sequence:

GCTGCCTCTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

AGGCTTTTGAGT

Flanking Amino Acid:

SSLQDDKPVKRWPWKMGTVP

Intron Amino Acid Position:

407

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.5

0.41

1.2

55.8

43.9

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

72.4

0.5

0.9

61.9

39.9

Minor 5ss

34.2

-1.8

2.9

41.3

44.7

Minor BPS

47.1

-0.1

1.6

58.39

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013528

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014099

18675554 - 18698720

23167