Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18683093_18686558_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18683093 - 18686558

Intron Length:

3466

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTTAGTCTC

5'SS Class:

major

3'SS Sequence:

CTTCAACTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAA

U12 Branch Point Sequence:

CTCTCTTCAACT

Flanking Amino Acid:

ERDTFEAKKPAPQSTKPLQK

Intron Amino Acid Position:

381

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.2

68.6

42.4

Major BPS

78.2

0.7

79.9

32.6

Major PPT

76.5

0.6

0.9

66.3

39.5

Minor 5ss

35.6

-1.6

2.9

47.5

40.8

Minor BPS

67.4

0.62

1.6

79.65

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013528

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014099

18675554 - 18698720

23167