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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18686614_18687147_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18686614 - 18687147
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TTCCTTTGGAGC
Flanking Amino Acid:
QSLLRQLELLREMNKKLRDE
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
68
0.41
1.1
65.3
39.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
44.9
-0.4
1.7
54.7
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013528
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014099
18675554 - 18698720
23167