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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18692418_18694567_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18692418 - 18694567
Intron Length:
2150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
GTGCTTGCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTTTCCTTCTCT
Flanking Amino Acid:
EQLGAAQVFEDPSEVRELWA
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
66.4
45.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
71.3
0.48
1
61.8
44.4
Minor 5ss
36.4
-1.5
2.7
39
40.1
Minor BPS
47.2
-0.1
3.6
83.49
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013528
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014099
18675554 - 18698720
23167