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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18697056_18698464_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18697056 - 18698464
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
CATGCCTTCATT
Flanking Amino Acid:
KGFITKLDMQRLQSELPLTL
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.4
30.8
Major BPS
75
0.62
1.1
77.2
36
Major PPT
89.7
0.89
0.6
85.1
22.4
Minor 5ss
23.1
-3.1
3.2
28
44
Minor BPS
56.8
0.29
1.9
72.44
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013528
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014099
18675554 - 18698720
23167