Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18722114_18722720_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18722114 - 18722720

Intron Length:

607

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTGAC

U12 Branch Point Sequence:

ACATCCTGACCC

Flanking Amino Acid:

KKKLGNHLSARLYFELGGPQ

Intron Amino Acid Position:

394

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

66.1

45.1

Major BPS

68.9

0.47

59.2

39.1

Major PPT

86.9

0.83

0.7

84.6

30.4

Minor 5ss

40.5

-1.1

3.3

55.3

48.9

Minor BPS

53.7

0.1

1.8

62.62

42.5

Associated Gene:

Gene:

PNPLA2

Ensembl Gene ID:

ENSAPLG00000013222

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013794

18720009 - 18738172

18164