About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18722844_18723312_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
18722844 - 18723312
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TGTCTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAA
U12 Branch Point Sequence:
GTGAGCTGAACT
Flanking Amino Acid:
PLESAVSFTVRLLEWLPDIP
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
58.2
0.2
1.1
49.1
38
Major PPT
80.8
0.69
0.8
72.9
37.4
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
51
0.11
2
70.66
45.5

Associated Gene:

Gene:
PNPLA2
Ensembl Gene ID:
ENSAPLG00000013222
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013794
18720009 - 18738172
18164