Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18723446_18723874_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18723446 - 18723874

Intron Length:

429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGATCC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGTCTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTCAG

U12 Branch Point Sequence:

ACTGCAGGGATT

Flanking Amino Acid:

FEHLPPRLNQALLEACAERR

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

71.3

33.2

Major BPS

50.5

0.01

1.6

63.4

44.3

Major PPT

83.3

0.75

0.8

80.6

31.4

Minor 5ss

45.3

-0.5

2.7

60.2

44.5

Minor BPS

38.2

-0.8

2.2

54.54

41.6

Associated Gene:

Gene:

PNPLA2

Ensembl Gene ID:

ENSAPLG00000013222

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013794

18720009 - 18738172

18164