About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18726047_18728555_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18726047 - 18728555
Intron Length:
2509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
GLIPPTLRGVRYVDGGISDN
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86.5
0.82
0.7
84.8
28.4
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
PNPLA2
Ensembl Gene ID:
ENSAPLG00000013222
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013794
18720009 - 18738172
18164