Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18745597_18745656_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18745597 - 18745656

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTACAGTCC

5'SS Class:

major

3'SS Sequence:

CTTGAGAGCACAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGATAAT

U12 Branch Point Sequence:

ACTTCAGGAACT

Flanking Amino Acid:

KNIEDVIAQGKTAANSPIIH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.2

0.24

1.1

54.7

37.6

Major BPS

63.8

0.34

1.2

64.1

39.8

Major PPT

57.8

0.18

1.1

49.8

42.5

Minor 5ss

-1.4

3.5

50.1

Minor BPS

47.6

-0.1

2.3

72.58

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013634

18743569 - 18747636

4068