Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18752651_18753205_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18752651 - 18753205

Intron Length:

555

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTGTAACCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

CTTGTTGTAACC

Flanking Amino Acid:

NRLSSIPDSIGNLKALRQLH

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.3

0.95

0.8

27.8

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

74.6

0.55

0.9

67.4

Minor 5ss

44.7

-0.6

3.2

66.4

45.1

Minor BPS

49.3

-0

2.1

64.58

42.1

Associated Gene:

Gene:

PIDD1

Ensembl Gene ID:

ENSAPLG00000012991

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020398

18749485 - 18764005

14521

ENSAPLT00000013549

18750241 - 18762207

11967