Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18761301_18761969_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18761301 - 18761969

Intron Length:

669

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TACCTTTCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTTAT

U12 Branch Point Sequence:

TACTTCTGCACT

Flanking Amino Acid:

QQIERIGYNHREDLDKQILD

Intron Amino Acid Position:

786

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.3

1.02

0.8

76.2

39.9

Major BPS

71.3

0.53

61.3

Major PPT

0.74

0.8

80.8

30.8

Minor 5ss

32.1

-2

3.1

40.6

45.6

Minor BPS

0.17

1.9

73.44

43.4

Associated Gene:

Gene:

PIDD1

Ensembl Gene ID:

ENSAPLG00000012991

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020398

18749485 - 18764005

14521

ENSAPLT00000013549

18750241 - 18762207

11967