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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1876867_1878044_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1876867 - 1878044
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TGTTACTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTCATAACA
Flanking Amino Acid:
YVQHVPMPKSNSYDQSALQA
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77
31.5
Major BPS
100
1.24
0.5
100
0
Major PPT
80
0.67
0.9
77.2
36.7
Minor 5ss
38.1
-1.3
3.3
50.7
41.2
Minor BPS
64.7
0.46
1.6
72.79
38.9

Associated Gene:

Gene:
ZNF143
Ensembl Gene ID:
ENSAPLG00000002385
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002442
1855696 - 1879635
23940