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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18784385_18787251_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18784385 - 18787251
Intron Length:
2867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAGAC
U12 Branch Point Sequence:
AGCGCTGAGACA
Flanking Amino Acid:
MADKQISLPAKLINGG
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
46.7
-0.2
1.2
41.8
39.2
Major PPT
80.2
0.68
0.8
73.5
31.4
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
38.4
-0.9
2.2
44.09
38.9

Associated Gene:

Gene:
SLC25A22
Ensembl Gene ID:
ENSAPLG00000012816
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013357
18784269 - 18802627
18359