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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18787378_18789588_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18787378 - 18789588
Intron Length:
2211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAT
U12 Branch Point Sequence:
CGGGGCTCATCT
Flanking Amino Acid:
QQNGQRMYTSMSDCLIKTIR
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.6
29.4
Major BPS
62
0.3
1.3
65.3
43.7
Major PPT
78.2
0.63
0.9
72.4
37.6
Minor 5ss
35.4
-1.7
2.9
48.5
40.3
Minor BPS
40.1
-0.6
2.1
52.26
48.2

Associated Gene:

Gene:
SLC25A22
Ensembl Gene ID:
ENSAPLG00000012816
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013357
18784269 - 18802627
18359