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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18789645_18792592_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18789645 - 18792592
Intron Length:
2948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CATTCTCCAATG
Flanking Amino Acid:
RSEGYFGMYRGAAVNLTLVT
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
76.4
0.6
0.7
69.3
31.3
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
46.9
-0.3
1.9
53.28
42

Associated Gene:

Gene:
SLC25A22
Ensembl Gene ID:
ENSAPLG00000012816
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013357
18784269 - 18802627
18359