About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18792684_18799117_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18792684 - 18799117
Intron Length:
6434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TTCCTTTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCTCCTCTGACT
Flanking Amino Acid:
DFFRHHLSKDGKKLTLLREM
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
59.7
46.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
73.4
0.53
1
72.1
37.9
Minor 5ss
32.9
-2
2.8
31.4
42.5
Minor BPS
52
0.14
1.7
69.07
42.2

Associated Gene:

Gene:
SLC25A22
Ensembl Gene ID:
ENSAPLG00000012816
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013357
18784269 - 18802627
18359