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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18800805_18801671_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18800805 - 18801671
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CACTCACTCACT
Flanking Amino Acid:
TAAVAVNPCDVIKTRLQSLQ
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
64.9
0.37
1
67
29.8
Major PPT
84.1
0.77
0.7
77
31.7
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
44.3
-0.3
2.3
62.88
46.6

Associated Gene:

Gene:
SLC25A22
Ensembl Gene ID:
ENSAPLG00000012816
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013357
18784269 - 18802627
18359