About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18801748_18802373_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18801748 - 18802373
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
GGACACTGAGCT
Flanking Amino Acid:
DTYSGILDCTKKIWQKEGPT
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.1
31.5
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
77.8
0.63
0.8
69.6
36.7
Minor 5ss
36.7
-1.5
3.5
51
39.9
Minor BPS
44.7
-0.3
1.8
58.99
42.7

Associated Gene:

Gene:
SLC25A22
Ensembl Gene ID:
ENSAPLG00000012816
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013357
18784269 - 18802627
18359