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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18817756_18821056_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
18817756 - 18821056
Intron Length:
3301

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCTTTTCCT
5'SS Class:
weak_major
3'SS Sequence:
ACAAACTCAGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
TTGACCTCGACA
Flanking Amino Acid:
KLQLKKQLRKCIAGVSKLRN
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1.4
53.2
45.1
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
43.6
-0.3
1.7
40.9
38.1
Minor 5ss
29.2
-2.4
3.7
40.7
39.2
Minor BPS
61.4
0.35
1.6
71.75
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025316
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035043
18816999 - 18821121
4123