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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18824258_18825278_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18824258 - 18825278
Intron Length:
1021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
AGGTAATGAACT
Flanking Amino Acid:
PPVDKTKNEEYMKKLHMQER
Intron Amino Acid Position:
1593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
67.7
0.44
1
58
38.9
Major PPT
78
0.63
0.9
72.8
37.5
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
48.3
-0
1.9
67.03
42.6

Associated Gene:

Gene:
PHRF1
Ensembl Gene ID:
ENSAPLG00000012427
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012959
18820328 - 18845341
25014