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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18829673_18830108_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18829673 - 18830108
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
AAAAGCTTAATT
Flanking Amino Acid:
RDGSLTAKKAAPLHRKSAKD
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
71.6
0.49
1
66.2
40.8
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
56
0.27
1.8
69.51
41.1

Associated Gene:

Gene:
PHRF1
Ensembl Gene ID:
ENSAPLG00000012427
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012959
18820328 - 18845341
25014