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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18832133_18833031_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18832133 - 18833031
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGACAATAATT
Flanking Amino Acid:
GDPYELDPYESNEEVPANPD
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
29.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.3
0.66
0.9
73.4
36.2
Minor 5ss
39.2
-1.2
3
51.6
45.1
Minor BPS
52.4
0.15
1.9
75.18
41.3

Associated Gene:

Gene:
PHRF1
Ensembl Gene ID:
ENSAPLG00000012427
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012959
18820328 - 18845341
25014