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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18837068_18837600_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18837068 - 18837600
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTGAC
U12 Branch Point Sequence:
TTTTCTTTCAAG
Flanking Amino Acid:
CAPMGISAAADTDHVSEEEV
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
82
31
Major BPS
54.8
0.12
1.1
46.8
37.9
Major PPT
80.2
0.68
1
79.1
33.2
Minor 5ss
29.7
-2.3
3.7
45.9
49.3
Minor BPS
61
0.2
1.9
72.3
40.7

Associated Gene:

Gene:
PHRF1
Ensembl Gene ID:
ENSAPLG00000012427
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012959
18820328 - 18845341
25014